H23LNBCXX_l02n01_bir_1228_pcontrolb_3.35100000042b81.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pcontrolb_3.35100000042b81.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	184058
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	7434	4.038944245835552	RNA PCR Primer, Index 27 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGT	611	0.33196057764400355	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	346	0.18798422236468937	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	281	0.15266926729617838	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCG	259	0.14071651327299003	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	256	0.13908659226982797	No Hit
GAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	244	0.1325669082571798	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	244	0.1325669082571798	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	243	0.13202360125612578	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	214	0.11626769822555934	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	199	0.10811809320974909	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	186	0.1010551021960469	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATGTG	20	7.009487E-4	45.01087	5
TGCCGTC	775	0.0	40.93425	45
ATGCCGT	785	0.0	40.412792	44
CGTATGC	805	0.0	39.40875	41
GTATGCC	805	0.0	39.40875	42
TCGTATG	805	0.0	39.40875	40
GACGAAT	800	0.0	39.37381	26
CTCGTAT	815	0.0	39.20127	39
TATGCCG	810	0.0	39.16548	43
ATTGCTA	815	0.0	38.925205	31
CACGAGA	825	0.0	38.726105	21
CCCACGA	825	0.0	38.726105	19
ACGAATT	815	0.0	38.64914	27
GTATAAC	35	6.209424E-6	38.58075	1
CTATCTC	835	0.0	38.262318	35
TATCTCG	835	0.0	38.262318	36
TTGCTAT	830	0.0	38.221737	32
CGAATTG	830	0.0	38.221737	28
CGAGACG	830	0.0	38.221737	23
GAATTGC	825	0.0	38.180664	29