H23LNBCXX_l02n01_bir_1228_pb_95.35100000042b0a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pb_95.35100000042b0a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8722
Sequences flagged as poor quality	0
Sequence length	51
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTC	2178	24.97133684934648	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGT	215	2.465030956202706	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCG	46	0.5274019720247649	No Hit
ATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTCTTC	31	0.355423068103646	TruSeq Adapter, Index 4 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACCATCAGCATCTCGTATGCCGTCT	17	0.19490942444393486	RNA PCR Primer, Index 18 (95% over 21bp)
TATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTCTT	12	0.13758312313689522	RNA PCR Primer, Index 4 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTCT	12	0.13758312313689522	RNA PCR Primer, Index 36 (95% over 21bp)
CTTAATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGT	9	0.10318734235267141	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	260	40.673077	45
ATGCCGT	285	37.105263	44
ATCTCCG	290	36.46552	10
TCCGAGC	290	36.46552	13
AGCCCAC	295	35.847458	17
GTATGCC	295	35.847458	42
TATGCCG	295	35.847458	43
CATCTCC	295	35.847458	9
GAGCCCA	295	35.847458	16
CACGAGA	295	35.847458	21
CCGAGCC	295	35.847458	14
TCTCCGA	295	35.847458	11
CTCCGAG	295	35.847458	12
ACGAGAC	290	35.68966	22
CGAGACC	290	35.68966	23
GAGACCA	290	35.68966	24
ATCTCGT	300	35.250004	37
CACATCT	300	35.250004	7
GCCCACG	300	35.250004	18
CCACGAG	300	35.250004	20