H23LNBCXX_l02n01_bir_1228_pb_84.351000000429ad.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pb_84.351000000429ad.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	244390
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	6531	2.672367936494947	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCG	1734	0.7095216661892876	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGT	836	0.3420761896967961	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	363	0.14853308236834567	No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGC	300	0.12275461352755841	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	273	0.11170669831007815	No Hit
ATCTTACAGCATGTGTGTTGGAAGATGAGAAGTTAAAACTGAGTTATAAGA	260	0.10638733172388395	No Hit
GTATTAATGCTTGTGATATCTAAGTAGTTAGTTGTGATATCTATGCCATGG	257	0.10515978558860836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCTAGC	20	7.015926E-4	45.00839	1
GCGACGG	20	7.023005E-4	44.99918	12
CCTATCA	20	7.023005E-4	44.99918	36
TGCCGTC	680	0.0	42.68305	45
TCTAGCA	35	6.220145E-6	38.578617	2
GTCCTCA	30	1.1374147E-4	37.49932	42
ATGCCGT	785	0.0	36.97385	44
GCCCTAT	25	0.002104058	35.999344	34
CGTCCAC	25	0.002104058	35.999344	6
TGCACAG	25	0.002104058	35.999344	22
TGTCCTC	35	2.8142246E-4	32.14227	41
CTAGCAC	50	1.9703166E-6	31.505873	3
TCGGAGC	30	0.0051347367	30.005596	4
TGCCCTA	30	0.005139879	29.999454	33
CTACTTG	30	0.005139879	29.999454	27
TTTCGTG	30	0.005139879	29.999454	13
GGGAGGT	45	3.480154E-5	29.999454	14
ACGGATC	30	0.005139879	29.999454	15
GTCCACT	30	0.005139879	29.999454	7
TATGCCG	970	0.0	29.922134	43