H23LNBCXX_l02n01_bir_1228_pb_6.35100000041ffa.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pb_6.35100000041ffa.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28158
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCGTC	6669	23.684210526315788	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCGT	657	2.3332623055614747	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCG	141	0.5007457916045174	No Hit
GAATAAAATACTTAGGAACAAATTTAATGAAAGCAGCGCATACAAGACTTG	47	0.16691526386817246	No Hit
ACACATTTTTTATTCAAAGTTTTCCAACATCGGTAATCTCGAAAAATCAAA	46	0.1633638752752326	No Hit
ACATTCATTATAATCTGGCTGAATTAATTGCTGAAGCAAAGGATAAAAATA	33	0.1171958235670147	No Hit
GATAAACATATCTTTCGAGGAGTTTTATCTAGTATACGTACATTCTTCTCT	33	0.1171958235670147	No Hit
ATATATACTTTTGGCTTTAGGAAAAGATGAGCAGTCCAGATTTCATATGCA	32	0.11364443497407486	No Hit
TTATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCGTCT	32	0.11364443497407486	No Hit
ACAAATATTAGATGAAACAAGACAAAAGGGCATGTTCATACTAACAGGCTC	32	0.11364443497407486	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCG	31	0.11009304638113501	No Hit
ATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCGTCTTC	29	0.10299026919525535	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	765	42.647057	45
ATGCCGT	845	38.343193	44
TCGTATG	875	37.285713	40
GTATGCC	870	37.24138	42
TATGCCG	870	37.24138	43
AGCCCAC	885	37.118645	17
CGTTATC	885	37.118645	33
GCCCACG	885	37.118645	18
CCACGAG	885	37.118645	20
ACGAGAC	885	37.118645	22
TATCTCG	885	37.118645	36
GCGTTAT	885	37.118645	32
CGAGCCC	885	37.118645	15
TCTCCGA	885	37.118645	11
CGAGACA	885	37.118645	23
GTTATCT	885	37.118645	34
CTCCGAG	885	37.118645	12
CAATGCG	880	37.073864	28
TGCGTTA	880	37.073864	31
ATGCGTT	880	37.073864	30