FastQCFastQC Report
Fri 12 Feb 2016
H23LNBCXX_l02n01_bir_1228_pb_37.351000000423cc.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23LNBCXX_l02n01_bir_1228_pb_37.351000000423cc.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGTC107.092198581560284No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGT21.4184397163120568No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTTCGTATCTCGTATGCCGTC21.4184397163120568No Hit
GCGTTGATACCACTGCTCCCGTACTCTGCGTTGATACCCTGTCTCTTATAC10.7092198581560284No Hit
GTTAATTGGAGTTTCCTGGATCACAGTGCATATGCATCCCTAAAGTAACCT10.7092198581560284No Hit
ATTCTATTTGAATAAGTGAACTGATAGAAGTGTTCAGTATTGTTTTTTCTG10.7092198581560284No Hit
TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACCTGTCT10.7092198581560284No Hit
CTTATACACATCTCCAAGCCCACGAGACAATTCGTTATCTCGTATGCCGTC10.7092198581560284No Hit
GCCTTATTAAGGTGGGTGGTACTAGCACAATATAGGGGCTGTCTCTTATAC10.7092198581560284No Hit
CCCTAACATTGTGGACAAGAAGTTTACGGAATCCATGGTGGTCTCTCATAC10.7092198581560284No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAACTACAAC10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
GGATGAACCGGAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAAC10.7092198581560284No Hit
AGCTACCAGAGTCTAAAACTTTATTTTATCACTGTCTCTTATACACATCTC10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACGTCTTCGTATCTCGTATGCCGTC10.7092198581560284No Hit
GATGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAGAGAAATAAG10.7092198581560284Illumina PCR Primer Index 5 (96% over 28bp)
GACTACGACCGTGGAAAGCATGATTAAGGGCGATGATACGTCCTGTCTCTT10.7092198581560284No Hit
AGGGAAAGGTGAAACGAACCCGTGAGAGGGAGTGAAATAGAACATGAAACC10.7092198581560284No Hit
GACAGAGTTAATTAAAGCGAAAATTGATAAAAAGCTTACGTTCCTGTCTTT10.7092198581560284No Hit
CATTCACTCTGCGTTCTGTCTCTTATACACATCTCCGAGCCCACGAGACGT10.7092198581560284No Hit
AAACTCTTGTCATTTTATTTCTGCATGGAGTCTTTTTAGTTAAGCAACTTT10.7092198581560284No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCCACCTTATCTCGTATGCCG10.7092198581560284No Hit
GCTTTCATCCTGAGATCGTATGCCGTCTTCTGCTTGAAAAAAAAAACACCC10.7092198581560284Illumina Single End Adapter 1 (96% over 25bp)
CTTATACACATCTCCGAGCCCACGAGACCTCTGGACATCTCGTATGCCGTC10.7092198581560284No Hit
GCATGATTCGATCAGTTATCGTCTTCCATCTGTAAAATTTTTGCCTGTTTT10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTACATATCTCGTATGCCGTC10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTATTCATATCTCGTATGCCGTC10.7092198581560284RNA PCR Primer, Index 27 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAACGTCTTAGTATCTCGTATGCCGTCT10.7092198581560284No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAATTTAAGTTCGAAT10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
ATACTTGTCTCAAAGATTAAGCCATGCAAGTCTAAGTACGAGCTCTCGTAC10.7092198581560284No Hit
GTTCAACGCAGAGTACGGGGTGGCTGTCTCTTATACACATCTCCGAGCCCA10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGTC10.7092198581560284RNA PCR Primer, Index 13 (95% over 21bp)
GAGAATGGAAGTCTCACAACACAAAAAATACACTGGTCCAAGTGCTGTCTC10.7092198581560284No Hit
GAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACCTGTCTCTT10.7092198581560284No Hit
GATGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGAAATGACACA10.7092198581560284Illumina PCR Primer Index 5 (96% over 28bp)
CATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAACACACAAAAGCCGAC10.7092198581560284Illumina Paired End PCR Primer 2 (96% over 25bp)
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTCTGTCTCTTATACACATCT10.7092198581560284No Hit
GGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCTGTCTCTT10.7092198581560284No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTC10.7092198581560284No Hit
GCTTCGGTTGTTGTGCATTCGCTCTAACACCGGCATCGCCGACAATTCCAA10.7092198581560284No Hit
TTGTTCTTCTATACAAAATTGAATGGTCTGACCATGTTTAAGTTGATCCAG10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTATTCTAATCTCGTATGCCGTC10.7092198581560284No Hit
GAGTGAAAACGGTGGAGATAAACAAGAAGCAACAGAAGGTGACCTGTCTCC10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCCCTATGTATCTCGTATGCCGTC10.7092198581560284Illumina PCR Primer Index 2 (95% over 22bp)
AAAAAGTACTCTGCGTTGATACCACCCGTACTCTGCGTTGATACCCTGTCT10.7092198581560284No Hit
GCTTCCCGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCC10.7092198581560284No Hit
ACCGAATAATATCCACGATCAACAAAATCTCCCATAAACAAATAGTTGGTC10.7092198581560284No Hit
GGCAACTACTTTTCACCCAGTGTCCTCTGGAACTGTCTCTTATACACATCT10.7092198581560284No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCC10.7092198581560284No Hit
GTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGACTGTCTCTT10.7092198581560284No Hit
GTTTTGTCTTCACTTTATTCTTTCTATCTACCATGGAATGTAAATGGTTAT10.7092198581560284No Hit
AAAAAAAGTACTCTGCGTTGATACCACTCCCGTACCTGTCTCTTATACACA10.7092198581560284No Hit
ACCCATGGATCTGTTTCCTTGTACTCATACTTCTGTCTCTTAACACATCTC10.7092198581560284No Hit
ATCTGAATCTTTAGCTTCTGCAAATGGATCGTATGCCGTCTTCTGCTTGAA10.7092198581560284Illumina Single End Adapter 2 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACCTCTTCTAATCTCGTATGCCGTC10.7092198581560284TruSeq Adapter, Index 12 (95% over 21bp)
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAATTAGCGACTAA10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCTCTACTCATCTCGTATGCCGTC10.7092198581560284No Hit
GGATTATCCCATTCACGGGGATACGCCCCATAAGCGCGCATATCGCAACCT10.7092198581560284No Hit
TCTGCGTTGATACCACTGCTCCCGTACTCTGCGTTGATACTGTCTCTTATA10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCCCAACTTATCTCGTATGCCGTC10.7092198581560284No Hit
CACCTATCCTACGCAGAATACCCCCGTACTCTGCGTTGATACTGTCTCTTA10.7092198581560284No Hit
GAGTACGGGGGTATCAACGCAAAAAAAAAAAACTGTCTCTTAAACACATCC10.7092198581560284No Hit
GTTTATGATGCTCCAGATACTGTTACATGTCTCGTATGCCGTCTTCTGCTT10.7092198581560284RNA PCR Primer, Index 44 (96% over 25bp)
GTGTTATCTTTCAGATTGATTCAACATGTCAGTCTGAAGTTTATCTGTCTC10.7092198581560284No Hit
TCTTATACACATCTCCGAGCCCACGAGAGTCTGGACCATCTCGTATGCCGT10.7092198581560284No Hit
TCACTGATCATCTTGTCATACTCGTCAAAGGTGTAAGTAGCAGGCATGTGG10.7092198581560284No Hit
AGCTTCCACCATGTTTCTCCGATCACTCAATCTCTGTACAATACTACCTGT10.7092198581560284No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCT10.7092198581560284No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAAAACATA10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
GATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGA10.7092198581560284No Hit
GTCGTTGAGAAAAAAACAATGCTTGAGGGATACAACATTAGGGCTGTCTCT10.7092198581560284No Hit
GTATCAACGCAGAGTACGGGGAGTACTTTTTTAAGCAGTGGTATCAACGCC10.7092198581560284No Hit
ATGTGATTTTAGCCAAGTTACAAGACAACAAGATTTCTTTTACTACAGATT10.7092198581560284No Hit
GTGCAGTTTTTATGGCTTCAAAGCAAGGGCAAGACCTAACTCTGTCTCTTA10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACTCAACTGTATCTCGTATGCCGTC10.7092198581560284No Hit
GTGCTTGATCTTCTTCGGCTTGGTGTAAGTCTTCTTCTTCCTCTTCTTAGC10.7092198581560284No Hit
TGCGTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAACAACTA10.7092198581560284RNA PCR Primer, Index 31 (96% over 28bp)
GTATTGATGTCCTTGTATTAATATTGGGTGCTTACACCTGTCTCTTATACA10.7092198581560284No Hit
AATCAAGTAAGACTACCCCCTGAACTTAAGCATATTAATAAGGGGAGGAAA10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTAGATATCTCGTATGCCGTC10.7092198581560284RNA PCR Primer, Index 38 (95% over 21bp)
GATGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAGTTAAAAC10.7092198581560284Illumina PCR Primer Index 5 (96% over 28bp)
CAGTGAGCCCACGAGACTCGCTATGATCTCGTATGCCGTCTTCTGCTTGAA10.7092198581560284RNA PCR Primer, Index 22 (96% over 28bp)
CTTCACAGCGAGTTCAATTTCACTGAGTCTCGGGTGGAGACAGCCTGGCCT10.7092198581560284No Hit
GAAGATAAGGACTATTTTTTAATCTTTGCAAATGTAAGGAAGAGAAAACTG10.7092198581560284No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAACACTTAAA10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
CCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAATACAAAAAGCCCCCC10.7092198581560284Illumina Single End Adapter 1 (95% over 23bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT10.7092198581560284No Hit
CTGTTAGAAGATGTATTGTAAGACAATCTTCGTCGGTATGTTAGTCCTGTC10.7092198581560284No Hit
CATAAGGGCTCATCTAACTCGTATGCCATCAAGAAGAAGGATGAATTTGAG10.7092198581560284No Hit
CTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTACAGCT10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCCCTACTTATCTCGTATGCCGTC10.7092198581560284No Hit
AAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAACATCATAGGATTT10.7092198581560284No Hit
GTAGTGTTGTTGGCAATTTGAATATGCTAAAGAGTCATTGTCAAGTGCCTT10.7092198581560284No Hit
CTTATACACATCTCCGAGGCCACGAGAGTCGCTATGATCTCGTATGCCGTC10.7092198581560284No Hit
AAAAAAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGC10.7092198581560284No Hit
GAATGAAATACCGAACTAAATATGAAGAAAGTCGATGTTTACGTGTGCCAC10.7092198581560284No Hit
GTAAAGTAACTTGAAATAATCTGGCTGTTTTCCGTTACACATGTACATGAT10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACATAGACTTATCTCGTATGCCGTC10.7092198581560284No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACGTATTCCGCC10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
GTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAATTGTCCTG10.7092198581560284No Hit
CAGCAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAAATACCTT10.7092198581560284RNA PCR Primer, Index 36 (96% over 29bp)
GTATCAACGCAGAGTACGGGCAGTGGTATCAACGCAAAAACTGTCTCTTAT10.7092198581560284No Hit
TGCGTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACCCTCTCTTCC10.7092198581560284RNA PCR Primer, Index 31 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCCCAACGTATCTCGTATGCCGTC10.7092198581560284No Hit
TGCGTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACGTATGACAAC10.7092198581560284RNA PCR Primer, Index 31 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCTATACTAATCTCGTATGCCGTC10.7092198581560284No Hit
CAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTT10.7092198581560284No Hit
GAATTGGAAAGCATTATTCTAAGTGAAGTAACTCAGGAATGGAAAACCAAA10.7092198581560284No Hit
GAAGGAAAGAGCTTATGAGCATTCACATGATTTTGAGAGGAGAAATGATCA10.7092198581560284No Hit
CTCTCTCTCTTATCTCTAATGGCGTTGAGGAACATTGAAAACGCTCTTCCG10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTATACAAATCTCGTATGCCGTC10.7092198581560284No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCG10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCCGCACTTATCTCGTATGCCGTC10.7092198581560284No Hit
CTCTTGGGGTCTTAGTTTTCCTCTTTGCCTTGTAAACATAAGCGCATTTCT10.7092198581560284No Hit
ATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGTCTTCTGCTTG10.7092198581560284TruSeq Adapter, Index 10 (96% over 28bp)
GGAGAATGTTATCACGGGAGACACACGGCGGGCTGTCTCTTATACACATCC10.7092198581560284No Hit
AGTTGATGCAGAGTTTCAAATCTAAGGAATATGTGAGAGAGACCTTTGCTC10.7092198581560284No Hit
CGTATTAGCTCTAGAATTACTACGGTTATCCGCTGTCTCTTATACACATCT10.7092198581560284No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAA10.7092198581560284No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAACAAAGAGA10.7092198581560284RNA PCR Primer, Index 27 (96% over 28bp)
ATGTGGATCACGTTCTGAATCCGTGAACTGGTGATGGTAACGACTGTCTCT10.7092198581560284No Hit
AGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCG10.7092198581560284No Hit
TGCTTGTCTCAAAGATTAAGCCATGCAAGTCTAAGTACGAGCTCTCGTACA10.7092198581560284No Hit
CTTAAACACATCTCCGAGCCCACGAGACTCAACTGTATCTCGTATGCCGTC10.7092198581560284No Hit
GATGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACGTCTGACGTC10.7092198581560284Illumina PCR Primer Index 5 (96% over 28bp)
CTTATACACATCTCCGAGCCCACGAGACCTCTTCTTATCTCGTATGCCGTC10.7092198581560284No Hit
GATGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAACATGGTTA10.7092198581560284Illumina PCR Primer Index 5 (96% over 28bp)
CTATGATGGCCTAAAAGAAGAATTTCGTAAAGAATTTACCAAGCTAGATGA10.7092198581560284No Hit
TTAGTAACCACTGGGTTGGAGCAATTGCCGTTAAGTGTCTTGCTCAAGCTG10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACATCTTCTTATCTCGTATGCCGTC10.7092198581560284No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTTCATATCTCGTATGCCGTC10.7092198581560284No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers