H23LNBCXX_l02n01_bir_1228_pb_29.351000000422cd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pb_29.351000000422cd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	543511
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGTC	74464	13.700550678827108	RNA PCR Primer, Index 13 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCGT	19192	3.531115285615195	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTATTCAAATCTCGTATGCCG	6144	1.130427903023122	No Hit
GGTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCA	718	0.13210404205250675	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	707	0.13008016397092237	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	667	0.12272060731061561	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	647	0.11904082898046221	No Hit
AAAAAGTACTCTGCGTTGATACCACCTGTCTCTTATACACATCTCCGAGCC	579	0.10652958265794069	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	575	0.10579362699191001	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCCG	20	7.031133E-4	44.998528	10
TGCCGTC	7730	0.0	44.35819	45
ACGACCC	35	6.2396703E-6	38.57372	5
TGCGGTC	25	0.0021064715	35.998825	45
ATGCCGT	9800	0.0	35.01161	44
TATGCCG	10460	0.0	32.802464	43
CGTATGC	10575	0.0	32.658504	41
CTCGTAT	10590	0.0	32.591003	39
ATCTCGT	10620	0.0	32.58368	37
GTATGCC	10540	0.0	32.574837	42
TCTCGTA	10620	0.0	32.562492	38
TCGTATG	10620	0.0	32.520123	40
AATCTCG	10640	0.0	32.458992	36
AAATCTC	10635	0.0	32.41079	35
GACCTAT	10670	0.0	32.325558	26
CAAATCT	10655	0.0	32.307716	34
AGACCTA	10690	0.0	32.307175	25
CGAGACC	10715	0.0	32.297764	23
ACGAGAC	10740	0.0	32.264484	22
GAGACCT	10720	0.0	32.240715	24