H23LNBCXX_l02n01_bir_1228_pa_96.35100000041f30.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pa_96.35100000041f30.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3537
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGTC	242	6.841956460277071	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCGT	16	0.45236075770426915	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAGCAGCAATCTCGTATGCCG	9	0.2544529262086514	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCAGCATCTCGTATGCCGTC	7	0.19790783149561775	RNA PCR Primer, Index 26 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACCATCAGCATCTCGTATGCCGTCT	6	0.16963528413910092	RNA PCR Primer, Index 18 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCCGT	35	8.137795E-8	45.0	44
CGAGCCC	35	8.137795E-8	45.0	15
CCGAGCC	35	8.137795E-8	45.0	14
TCCGAGC	35	8.137795E-8	45.0	13
AGCCCAC	40	2.3272514E-7	39.375004	17
GTATGCC	40	2.3272514E-7	39.375004	42
AATCTCG	40	2.3272514E-7	39.375004	36
ATCTCGT	40	2.3272514E-7	39.375004	37
GCCCACG	40	2.3272514E-7	39.375004	18
TGCCGTC	40	2.3272514E-7	39.375004	45
GAGCCCA	40	2.3272514E-7	39.375004	16
CCCACGA	40	2.3272514E-7	39.375004	19
TCTCGTA	40	2.3272514E-7	39.375004	38
ACGAGAC	40	2.3272514E-7	39.375004	22
CGTATGC	40	2.3272514E-7	39.375004	41
TCGTATG	40	2.3272514E-7	39.375004	40
CGAGACC	40	2.3272514E-7	39.375004	23
AGACCAG	40	2.3272514E-7	39.375004	25
GACCAGC	40	2.3272514E-7	39.375004	26
CTCGTAT	40	2.3272514E-7	39.375004	39