H23LNBCXX_l02n01_bir_1228_pa_88.35100000041e24.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pa_88.35100000041e24.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	36063
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGTC	6263	17.366830269251032	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCGT	874	2.42353658874747	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTCTTAGTATCTCGTATGCCG	250	0.6932312896874914	No Hit
ATACTAACTGTAATCTGGTAAACCCTTTGATTTTAAATGCTTTTGCAAAAT	88	0.24401741396999693	No Hit
ACTATAAGGAAGCTACATACGACTATCTATTTAACAGAATCAAACAAATCA	76	0.21074231206499738	No Hit
ATTACTAACAGAAACACTGCATAATCATTTCATAAGTTCGTTTGAAAACCA	69	0.19133183595374761	No Hit
AGTTAGAATAATCCTAATGACTACTGACTAATGACCATTGACCTTAATTGA	59	0.16360258436624797	No Hit
TAGCATACTACTCTGCATGAAGATTTTTCAATTCTTCTATCACTTCGCTAT	58	0.160829659207498	No Hit
AAAGTAGACATACAGACTAATGGAACAGAATTGAGAGTCCAGAAATAAATG	54	0.1497379585724981	No Hit
GACTTTAGACTGTAAAACTGAAGTGAGATATGACTTCATATCTATAGGGCT	52	0.1441921082549982	No Hit
ATATCAGGTGAATGATCTGCGATTGTATTCTCAAAACGATATTCGTTTTCT	52	0.1441921082549982	No Hit
ACTCATTTGTTTTGTTTCTTAAGTTCCACATTGGAGTGAAATCATATGGTA	51	0.14141918309624824	No Hit
GACAAAGATAAATTCCTAGAAAAGGAAATTGAACGCAATTTAGAGCTCTTC	50	0.13864625793749827	No Hit
GCTTTATAGATTTTCTGAATTTCAGCATCATAGAAAGCCTTATCTTTTCCT	47	0.13032748246124837	No Hit
TGTGTATTGATGTGTATTGATGGGAATACTCATTCATAGAGGAAGCAGATA	44	0.12200870698499847	No Hit
CCTTGAATAATTGGTGTATTATCTCCATCGAAACCATAAGAGCTTAATAAC	44	0.12200870698499847	No Hit
GTATTATAATGAAGCGGGTAAACCATTTGATACAAAATTGATTTACGATGA	43	0.11923578182624851	No Hit
GAAAAGAATCGAATCAAATTTAATGGAATCGAAAAGAATCGAATTGAATCG	43	0.11923578182624851	No Hit
CTATGATATTTACCTCTTTGACACAATCGCTAATGATTTTAAATACCTAAC	42	0.11646285666749853	No Hit
AAATACAAGGAAATCTGGAAACTACATCGGAAAAATCAAAGTCACATTTGA	42	0.11646285666749853	No Hit
AAATAAGACCTACTATAGTCTCACCCTAATAAAGACTACATTCAAACTACA	41	0.11368993150874859	No Hit
CATTTATTGTTCAGCTTATTTACCACCATATCTAAGGCCCTATAGTCGGAT	41	0.11368993150874859	No Hit
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	40	0.11091700634999861	No Hit
TAGGAGTAACAGCATCTATTATACTTGTGGGTCCTGTAGGAAAGTATTTTG	39	0.10814408119124863	No Hit
TAGATAATAAGATGGTAACTACAGAGTGAGATCAGGTTCCTGTTCATCATG	39	0.10814408119124863	No Hit
TACTTAACCCGATTTAAATTAAATATCCACCAAACAACTTCAATTCGAAAG	39	0.10814408119124863	No Hit
ATTTAAAGGGTCTACCAGATTTGATTAAGTGTGGTTTGGATTTTTAGTTAC	39	0.10814408119124863	No Hit
ATTCGATTCACTTGTTTTTTATTCGATTCGATTCAATTCTTTTCATTCCAA	38	0.10537115603249869	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	725	44.060814	45
ATGCCGT	835	38.256397	44
GTATGCC	850	37.581284	42
TATGCCG	850	37.581284	43
CGTATGC	850	37.581284	41
AGCCCAC	855	37.36151	17
ATCTCCG	855	37.36151	10
GAGCCCA	855	37.36151	16
CACGAGA	855	37.36151	21
CGAGCCC	855	37.36151	15
AGTATCT	850	37.316628	34
ACGAGAC	850	37.316628	22
TCGTATG	850	37.316628	40
TATCTCG	845	37.271214	36
CTCGTAT	845	37.271214	39
TTAGTAT	865	37.18965	32
GCCCACG	860	37.144295	18
CTTAGTA	860	37.144295	31
CCGAGCC	860	37.144295	14
TCTCCGA	860	37.144295	11

Summary

Basic Statistics

Per base sequence quality

Per tile sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content