H23LNBCXX_l02n01_bir_1228_pa_39.35100000041800.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_1228_pa_39.35100000041800.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	125384
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGTC	57827	46.1199196069674	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCGT	17991	14.348720729917694	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCTACTTATCTCGTATGCCG	9081	7.242550883685318	No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAAC	147	0.1172398392139348	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACA	126	0.10049129075480126	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGACCTT	20	7.0092315E-4	45.000004	25
GACCCCT	20	7.0092315E-4	45.000004	26
AACCGGG	35	1.2003875E-7	45.0	33
ACTGAAA	35	1.2003875E-7	45.0	43
GAACCGG	35	1.2003875E-7	45.0	32
CCGGGGG	35	1.2003875E-7	45.0	35
TGCCGTC	5795	0.0	44.65056	45
ACCGGGG	40	3.4254663E-7	39.375004	34
CGGGGGA	40	3.4254663E-7	39.375004	36
GGCGAAC	40	3.4254663E-7	39.375004	29
AGGCGAA	40	3.4254663E-7	39.375004	28
GAACTGA	40	3.4254663E-7	39.375004	41
CGAACCG	40	3.4254663E-7	39.375004	31
GGGGAAC	40	3.4254663E-7	39.375004	38
AATGAGG	40	3.4254663E-7	39.375004	24
ATGAGGC	40	3.4254663E-7	39.375004	25
ACTTGTC	25	0.0020999697	36.000004	33
GGGGATA	25	0.0020999697	36.000004	8
GAGACCC	25	0.0020999697	36.000004	24
GCGAACC	45	8.61799E-7	35.0	30