H23LNBCXX_l02n01_bir_0120_pe_91.351000000472a4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_91.351000000472a4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56100
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTC	17955	32.00534759358289	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGT	1575	2.807486631016043	No Hit
TTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCT	539	0.9607843137254901	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCG	396	0.7058823529411765	No Hit
ATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCTTC	376	0.6702317290552585	TruSeq Adapter, Index 7 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCTT	142	0.2531194295900178	RNA PCR Primer, Index 7 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	2095	42.834206	45
ATGCCGT	2265	39.51998	44
TCCGAGC	2350	38.47335	13
AGCCCAC	2340	38.44554	17
CCTAGGT	2320	38.423443	28
CTCCGAG	2355	38.39167	12
CGAGCCC	2350	38.377647	15
ACCTAGG	2335	38.369423	27
GAGCCCA	2345	38.363567	16
TCTCGTA	2330	38.355152	38
TAGGTTC	2325	38.340813	30
CTAGGTT	2325	38.340813	29
GAGACCT	2340	38.28744	24
GACCTAG	2340	38.28744	26
AGGTTCA	2330	38.258537	31
CGTATGC	2340	38.253315	41
TATGCCG	2340	38.253315	43
GTATGCC	2340	38.253315	42
GCCCACG	2350	38.220303	18
CACGAGA	2350	38.220303	21