H23LNBCXX_l02n01_bir_0120_pe_90.3510000004728a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_90.3510000004728a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62276
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTC	18788	30.168925428736593	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGT	1667	2.6767936283640568	No Hit
ATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCTTC	695	1.115999743079196	TruSeq Adapter, Index 7 (95% over 22bp)
TTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCT	591	0.9490012203738197	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCG	408	0.6551480506133984	No Hit
TATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCGTCTT	209	0.3356028004367654	RNA PCR Primer, Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCTAGGTTCATCTCGTATGCCG	78	0.12524889202903206	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	2175	41.066036	45
ATGCCGT	2345	38.088963	44
AGCCCAC	2410	37.808502	17
GCCCACG	2405	37.793556	18
TCCGAGC	2420	37.74524	13
GAGCCCA	2420	37.74524	16
CACGAGA	2400	37.68481	21
CCACGAG	2400	37.68481	20
CCGAGCC	2425	37.667416	14
CGAGCCC	2425	37.667416	15
CTCCGAG	2420	37.65227	12
ACGAGAC	2405	37.60646	22
CCCACGA	2420	37.559303	19
GAGACCT	2405	37.512913	24
AGACCTA	2405	37.512913	25
GACCTAG	2400	37.497322	26
ACCTAGG	2410	37.435085	27
TAGGTTC	2400	37.40358	30
CGAGACC	2420	37.373367	23
CCTAGGT	2410	37.341732	28