H23LNBCXX_l02n01_bir_0120_pe_85.351000000471f5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_85.351000000471f5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58897
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTC	6615	11.231471891607383	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGT	1052	1.786169074825543	No Hit
TTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCT	339	0.5755810992070903	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	93	0.15790277942849382	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCG	92	0.1562049000798003	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	80	0.13583034789547854	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	74	0.12564307180331766	No Hit
ATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCTTC	74	0.12564307180331766	TruSeq Adapter, Index 9 (95% over 22bp)
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	69	0.11715367505985025	No Hit
GGTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA	67	0.11375791636246328	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	65	0.11036215766507632	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	740	41.959457	45
ATGCCGT	885	34.83051	44
ATCTCGT	900	34.250004	37
TCTCGTA	900	34.250004	38
GATCTCG	900	34.250004	36
CTCGTAT	915	34.18033	39
CGTATGC	925	34.054054	41
TCGTATG	925	34.054054	40
CCGAGTT	930	33.870968	28
AGACCGA	930	33.870968	25
AGATCTC	905	33.812157	35
GAGTTAG	925	33.81081	30
ACGAGAC	925	33.81081	22
TATGCCG	920	33.750004	43
AGTTAGA	920	33.750004	31
ACCGAGT	935	33.68984	27
GTATGCC	930	33.629032	42
CCACGAG	930	33.629032	20
CACGAGA	930	33.629032	21
GACCGAG	930	33.629032	26