H23LNBCXX_l02n01_bir_0120_pe_84.351000000471db.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_84.351000000471db.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50558
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTC	5653	11.18121761145615	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGT	668	1.3212547964713794	No Hit
TTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCT	288	0.5696427865026307	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	66	0.1305431385735195	No Hit
AAAAAGTACTCTGCGTTGATACCCCGTACTCTGCGTTGATACCTGTCTCTT	58	0.11471972783733535	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	55	0.10878594881126627	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	54	0.10680802246924326	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	52	0.1028521697851972	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	635	0.0	41.811024	45
GCCGTCT	45	1.866465E-8	40.000004	45
ATGCCGT	750	0.0	35.4	44
CGAGTTA	795	0.0	34.81132	29
AGTTAGA	810	0.0	34.72222	31
GAGTTAG	805	0.0	34.658382	30
GATCTCG	800	0.0	34.59375	36
GACCGAG	800	0.0	34.59375	26
CCGAGTT	800	0.0	34.59375	28
TTAGATC	800	0.0	34.59375	33
ATCTCGT	805	0.0	34.37888	37
GTTAGAT	805	0.0	34.37888	32
GTATGCC	780	0.0	34.326923	42
CACGAGA	800	0.0	34.3125	21
AGACCGA	800	0.0	34.3125	25
ACCGAGT	810	0.0	34.166668	27
TCTCGTA	810	0.0	34.166668	38
AGATCTC	810	0.0	34.166668	35
TATGCCG	785	0.0	34.10828	43
CCACGAG	805	0.0	34.099377	20