H23LNBCXX_l02n01_bir_0120_pe_81.35100000047161.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_81.35100000047161.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25248
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTC	7262	28.762674271229404	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGT	613	2.427915082382763	No Hit
TTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCT	233	0.9228453738910012	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCG	177	0.7010456273764258	No Hit
ATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCTTC	100	0.3960709759188847	TruSeq Adapter, Index 9 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACCGAGTTAGATCTCGTATGCCGTCTT	53	0.20991761723700886	RNA PCR Primer, Index 9 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	860	41.849392	45
ATGCCGT	960	37.49008	44
CGAGCCC	990	37.035656	15
CTCCGAG	990	37.035656	12
AGCCCAC	995	36.84954	17
ATCTCCG	995	36.84954	10
ACATCTC	995	36.84954	8
CCGAGCC	995	36.84954	14
TCTCCGA	995	36.84954	11
CACGAGA	990	36.808445	21
CCCACGA	990	36.808445	19
ACGAGAC	990	36.808445	22
AGACCGA	990	36.808445	25
GAGACCG	990	36.808445	24
GAGCCCA	1000	36.6653	16
TCCGAGC	1000	36.6653	13
ATCTCGT	995	36.62347	37
CCACGAG	995	36.62347	20
CGTATGC	995	36.62347	41
TCGTATG	995	36.62347	40