H23LNBCXX_l02n01_bir_0120_pe_62.35100000046efb.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_62.35100000046efb.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283378
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGTC	24955	8.806258778027933	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGT	3260	1.150406877033503	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCG	798	0.2816026649916366	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	754	0.26607570100713535	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	629	0.22196500786934767	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	483	0.17044371828441165	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	480	0.16938506164910472	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	479	0.16903217610400242	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	450	0.15879849529603568	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	439	0.15491675429991036	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	422	0.14891770003317126	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	403	0.1422128746762275	No Hit
GGTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA	356	0.12562725405641934	No Hit
TTATACACATCTCCGAGCCCACGAGACTCCTGGTCATCTCGTATGCCGTCT	353	0.12456859742111244	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	344	0.12139262751519173	No Hit
TATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAA	316	0.11151183225232729	No Hit
GAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	311	0.10974740452681576	No Hit
GTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	285	0.10057238035415593	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	2390	0.0	43.490482	45
GCCGTCT	75	0.0	38.997093	45
ATGCCGT	2755	0.0	37.728584	44
CGGTTGA	30	1.1382515E-4	37.497208	17
GTATGCC	2890	0.0	36.044025	42
GCGTTCA	25	0.0021052058	35.99732	24
ACGGTTG	25	0.0021052058	35.99732	16
TATGCCG	2895	0.0	35.981777	43
CGTATGC	2905	0.0	35.857914	41
CATCTCG	2905	0.0	35.780468	36
CTGGTCA	2870	0.0	35.746464	31
CCTGGTC	2870	0.0	35.746464	30
ACGAGAC	2910	0.0	35.71899	22
ATCTCGT	2920	0.0	35.67371	37
CTCGTAT	2920	0.0	35.67371	39
CACGAGA	2920	0.0	35.67371	21
CGAGACT	2880	0.0	35.62235	23
TGGTCAT	2900	0.0	35.609417	32
GGTCATC	2895	0.0	35.593204	33
TCGTATG	2930	0.0	35.55196	40