H23LNBCXX_l02n01_bir_0120_pe_41.35100000046c69.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_41.35100000046c69.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	146153
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGTC	23911	16.360252611988805	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGT	7256	4.964660321717652	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCG	934	0.6390563313787606	No Hit
TTATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGTCT	797	0.545318946583375	Illumina PCR Primer Index 7 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACGTTAGGTCATCTCGTATGCCGTCTTC	196	0.13410603956128167	Illumina PCR Primer Index 7 (95% over 23bp)
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	153	0.10468481659630662	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	150	0.10263217313363393	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTC	35	1.2022974E-7	44.999657	45
TGCCGTC	2725	0.0	42.10977	45
TCTGAAC	25	0.0021011878	35.999725	30
AGATTAG	25	0.0021011878	35.999725	22
ATGCCGT	3450	0.0	33.260616	44
CTGTACA	35	2.8085508E-4	32.142612	4
CGTATGC	3600	0.0	31.999756	41
ATCTCGT	3595	0.0	31.981676	37
CATCTCG	3590	0.0	31.963545	36
TATGCCG	3590	0.0	31.963545	43
GGTCATC	3605	0.0	31.955378	33
GTATGCC	3595	0.0	31.919088	42
GAGACGT	3610	0.0	31.911114	24
CGAGACG	3625	0.0	31.903208	23
CTCGTAT	3605	0.0	31.892963	39
CGTTAGG	3605	0.0	31.892963	28
AGACGTT	3605	0.0	31.892963	25
TCTCGTA	3605	0.0	31.892963	38
AGGTCAT	3620	0.0	31.885115	32
ACGAGAC	3635	0.0	31.877338	22