H23LNBCXX_l02n01_bir_0120_pe_35.35100000046bae.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_35.35100000046bae.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	159434
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCGTC	23017	14.436694807882885	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCGT	7066	4.431927945105811	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCG	702	0.44030758809287857	No Hit
TTATACACATCTCCGAGCCCACGAGACGGCATAGGATCTCGTATGCCGTCT	586	0.3675502088638559	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	211	0.1323431639424464	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	207	0.129834288796618	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	182	0.11415381913519072	No Hit
AAAAAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGC	181	0.11352660034873366	No Hit
GGTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCA	181	0.11352660034873366	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	2410	0.0	42.562527	45
TTGATGC	25	0.0021008872	36.00276	28
CGTCTTC	25	0.0021041264	35.991467	45
ACCTTAA	25	0.0021041264	35.991467	16
ATGCCGT	3165	0.0	32.409378	44
CTCGTAT	3320	0.0	31.235065	39
TCTCGTA	3325	0.0	31.197882	38
ATCTCGT	3320	0.0	31.177092	37
GATCTCG	3315	0.0	31.156233	36
TATGCCG	3315	0.0	31.146461	43
CGTATGC	3330	0.0	31.141266	41
GTATGCC	3320	0.0	31.099556	42
TCGTATG	3335	0.0	31.094576	40
GGATCTC	3325	0.0	31.062532	35
GCATAGG	3335	0.0	31.036861	30
AGACGGC	3330	0.0	31.015892	25
ACGGCAT	3330	0.0	31.015892	27
GGCATAG	3345	0.0	31.011347	29
GACGGCA	3325	0.0	30.994858	26
CGGCATA	3340	0.0	30.990402	28