H23LNBCXX_l02n01_bir_0120_pe_30.35100000046aff.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0120_pe_30.35100000046aff.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	222351
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCGTC	9571	4.304455567998345	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCGT	1126	0.5064065374115699	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	483	0.2172241186232578	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCGTGTGCATCTCGTATGCCG	360	0.16190617537137228	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	303	0.13627103093757167	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	291	0.1308741584251926	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	286	0.12862546154503465	No Hit
TATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	281	0.1263767646648767	No Hit
GTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	259	0.11648249839218174	No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA	230	0.10344005648726562	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1060	44.36321	45
ATGCCGT	1160	40.53879	44
TATGCCG	1210	38.863636	43
CGTATGC	1230	38.414635	41
CTCGTAT	1230	38.414635	39
GTATGCC	1225	38.387753	42
CGTGTGC	1215	38.333332	30
GACTCGT	1245	38.13253	26
ATCTCGT	1240	38.10484	37
GTGCATC	1225	38.020405	33
CCACGAG	1255	38.00797	20
AGACTCG	1250	37.98	25
CATCTCG	1245	37.95181	36
ACTCGTG	1235	37.894733	27
CACGAGA	1260	37.857143	21
CGAGACT	1260	37.857143	23
ACGAGAC	1260	37.857143	22
GCATCTC	1250	37.8	35
CTCGTGT	1235	37.712547	28
CCCACGA	1275	37.411762	19