H23LNBCXX_l02n01_bir_0113_pc_96.35100000045b38.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_96.35100000045b38.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	36971
Sequences flagged as poor quality	0
Sequence length	51
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	9127	24.686916772605557	No Hit
ATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTC	720	1.947472343187904	RNA PCR Primer, Index 34 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	643	1.7392009953747531	RNA PCR Primer, Index 41 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	334	0.9034107814232776	RNA PCR Primer, Index 41 (95% over 23bp)
TATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTT	161	0.43547645451840633	RNA PCR Primer, Index 34 (95% over 22bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	159	0.4300668091206622	No Hit
CTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	53	0.1433556030402207	RNA PCR Primer, Index 41 (95% over 23bp)
ACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTCTG	40	0.10819290795488355	RNA PCR Primer, Index 34 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1080	39.166664	45
ATGCCGT	1165	36.309013	44
GTATGCC	1165	36.11588	42
TATGCCG	1175	36.0	43
CGTATGC	1175	36.0	41
TCTCGTA	1165	35.92275	38
TCGTATG	1180	35.847458	40
CTCGTAT	1175	35.80851	39
CTCCGAG	1175	35.80851	12
ATCTCGT	1170	35.76923	37
TCTCCGA	1185	35.696205	11
GCATCTC	1180	35.65678	35
ACTCGAC	1175	35.61702	27
GGCATCT	1175	35.61702	34
CCACGAG	1195	35.585773	20
ACGAGAC	1195	35.585773	22
ATCTCCG	1190	35.54622	10
CGAGACT	1190	35.54622	23
AGACTCG	1190	35.54622	25
GAGACTC	1190	35.54622	24