H23LNBCXX_l02n01_bir_0113_pc_91.35100000045a96.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_91.35100000045a96.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	30210
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	8121	26.881827209533267	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	595	1.9695465077788812	RNA PCR Primer, Index 41 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTC	397	1.3141343925852367	RNA PCR Primer, Index 34 (95% over 23bp)
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	256	0.8474015226746111	RNA PCR Primer, Index 41 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	151	0.49983449189010265	No Hit
TATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTT	105	0.3475670307845084	RNA PCR Primer, Index 34 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	42	0.13902681231380337	RNA PCR Primer, Index 41 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	31	0.10261502813637868	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	930	41.129032	45
ATGCCGT	1015	37.684727	44
TCGTATG	1025	37.536583	40
GTATGCC	1030	37.35437	42
CGTATGC	1030	37.35437	41
CGAGCCC	1030	37.35437	15
CTCGTAT	1030	37.35437	39
TATGCCG	1025	37.31707	43
CCGAGCC	1040	37.211536	14
AGCCCAC	1035	37.173912	17
CATCTCG	1005	37.164177	36
GCATCTC	995	37.085426	35
TCCGAGC	1045	37.033493	13
ATCTCGT	1015	37.019703	37
GAGCCCA	1040	36.99519	16
CACGAGA	1040	36.99519	21
CCCACGA	1040	36.99519	19
CGAGACT	1035	36.956524	23
TCTCGTA	1030	36.917477	38
GGCATCT	1000	36.899998	34