H23LNBCXX_l02n01_bir_0113_pc_9.35100000045069.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_9.35100000045069.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35205
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	10341	29.373668512995316	RNA PCR Primer, Index 45 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGT	1149	3.263740945888368	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCG	291	0.8265871325095868	No Hit
TTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCT	274	0.7782985371396108	No Hit
ATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCTTC	201	0.5709416276097146	RNA PCR Primer, Index 45 (95% over 24bp)
TATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCTT	90	0.2556455048998722	RNA PCR Primer, Index 45 (95% over 23bp)
CTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCT	47	0.13350376366993325	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCG	41	0.11646073000994178	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1115	42.36063	45
GCCCACG	1270	38.076126	18
CACGAGA	1270	38.076126	21
CCCACGA	1270	38.076126	19
ACGTTCA	1265	38.04882	27
GACGTTC	1265	38.04882	26
AGACGTT	1265	38.04882	25
CCGAGCC	1265	38.04882	14
TCATTAA	1255	37.993572	31
CATTAAT	1250	37.965614	32
AGCCCAC	1275	37.926807	17
CCACGAG	1275	37.926807	20
ACGAGAC	1275	37.926807	22
CGTTCAT	1270	37.899025	28
GTTCATT	1270	37.899025	29
CGAGCCC	1270	37.899025	15
CGAGACG	1270	37.899025	23
TCCGAGC	1270	37.899025	13
GAGACGT	1270	37.899025	24
ATGCCGT	1250	37.785683	44