H23LNBCXX_l02n01_bir_0113_pc_78.35100000045903.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_78.35100000045903.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	353590
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTC	4514	1.2766198139087643	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA	894	0.2528352046155152	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGT	762	0.21550383212194912	No Hit
GAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCT	747	0.21126163070222573	No Hit
TACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTA	685	0.19372719816736897	No Hit
CCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATG	572	0.16176928080545266	No Hit
TTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTT	461	0.13037699029949942	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGGGCG	20	7.022411E-4	45.005516	5
TGCCGTC	570	0.0	40.657127	45
TCCGCCC	30	1.1384502E-4	37.499294	20
GGCCGCT	30	1.1384502E-4	37.499294	14
ATGCCGT	625	0.0	36.719307	44
CACGAGA	650	0.0	36.691616	21
CCCACGA	655	0.0	36.41153	19
CGTATGC	640	0.0	36.210255	41
TATGCCG	635	0.0	36.14105	43
ACAACGC	25	0.0021038738	36.004414	3
ATTCGGC	25	0.002105335	35.99932	32
GCCCACG	665	0.0	35.863987	18
TCTCGTA	655	0.0	35.724518	38
CTCGTAT	660	0.0	35.453876	39
TCGTATG	655	0.0	35.381012	40
CATCTCG	665	0.0	35.187305	36
ACGAGAC	680	0.0	35.07287	22
GTATGCC	655	0.0	35.037506	42
CTGGACC	675	0.0	34.99934	30
CGAGACT	685	0.0	34.81686	23