H23LNBCXX_l02n01_bir_0113_pc_71.3510000004582e.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_71.3510000004582e.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	237604
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCGTC	23201	9.764566253093381	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCGT	4078	1.716301072372519	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCG	1107	0.46590124745374656	No Hit
CCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATG	289	0.12163094897392299	No Hit
GTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA	276	0.11615966061177421	No Hit
AACAAGTACCGCGAGGTAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAG	251	0.10563795222302653	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	239	0.10058753219642767	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCTAAC	20	7.025055E-4	44.996002	19
TGCCGTC	2380	0.0	43.672592	45
GGTCTAT	30	1.1321646E-4	37.52826	1
ATGCCGT	2780	0.0	37.46969	44
GCCGTTA	50	4.8279617E-8	36.019543	2
TAGTCCG	25	0.0020981552	36.019543	5
GTCCGAC	25	0.002104671	35.996803	7
TATGCCG	2905	0.0	35.934845	43
CGCTATG	2935	0.0	35.874153	30
GTATGCC	2925	0.0	35.842968	42
GATCTCG	2910	0.0	35.795788	36
ACTCGCT	2945	0.0	35.752342	27
CGAGACT	2960	0.0	35.72318	23
AGACTCG	2950	0.0	35.691746	25
CTCGCTA	2950	0.0	35.691746	28
CGTATGC	2945	0.0	35.67595	41
CTCGTAT	2940	0.0	35.6601	39
TCGTATG	2940	0.0	35.6601	40
TCGCTAT	2955	0.0	35.63135	29
GACTCGC	2955	0.0	35.63135	26