H23LNBCXX_l02n01_bir_0113_pc_63.35100000045712.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_63.35100000045712.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	385468
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	7646	1.9835628379009411	RNA PCR Primer, Index 39 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	1035	0.26850477860678446	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	736	0.1909367314537134	No Hit
GATACCACCCCGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCG	623	0.16162171697780361	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCTGTCTCTTATAC	528	0.13697635082549006	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACTGTCTCTTATACA	518	0.13438210175682547	No Hit
GGTATCAACGCAGAGTACGGGGTGGTATCCTGTCTCTTATACACATCTCCG	500	0.1297124534332292	No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATAC	406	0.10532651218778212	No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATACA	399	0.10351053783971692	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	740	0.0	42.261566	45
ATGCCGT	820	0.0	38.138485	44
AGTCGGC	30	1.13882386E-4	37.498272	20
TATGCCG	945	0.0	33.093716	43
GTATGCC	960	0.0	32.576622	42
CGTATGC	965	0.0	32.40783	41
GTCGGCA	35	2.817686E-4	32.141376	21
AAAAAGT	540	0.0	32.094345	1
TGTTATA	965	0.0	31.708382	29
CTCGTAT	990	0.0	31.589453	39
GTTATAC	975	0.0	31.383167	30
CATCTCG	990	0.0	31.36219	36
TCGTATG	1000	0.0	31.27356	40
TATACAT	995	0.0	31.20459	32
CTGTTAT	985	0.0	30.836142	28
TCTCGTA	1030	0.0	30.362677	38
TACATCT	1035	0.0	30.215998	34
ACTGTTA	1010	0.0	30.072872	27
CGAGACT	1025	0.0	30.071783	23
GCCACGC	30	0.0051442245	29.998617	19