H23LNBCXX_l02n01_bir_0113_pc_61.351000000456dd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_61.351000000456dd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	133806
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	1990	1.4872277775286609	RNA PCR Primer, Index 39 (95% over 21bp)
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCG	277	0.2070161278268538	No Hit
GTGCCCAACTGCGCGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAA	206	0.1539542322466855	No Hit
CTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTA	175	0.13078636234548524	No Hit
GTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTC	170	0.12704960913561425	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	146	0.10911319372823342	No Hit
CTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGA	139	0.103881739234414	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCACGA	220	0.0	39.88636	19
GTTATAC	220	0.0	39.88636	30
CTCGTAT	225	0.0	39.0	39
ATGCCGT	225	0.0	39.0	44
TGCCGTC	225	0.0	39.0	45
CGTATGC	230	0.0	38.152172	41
TATGCCG	230	0.0	38.152172	43
TCGTATG	230	0.0	38.152172	40
ATACATC	230	0.0	38.152172	33
TGTTATA	225	0.0	38.0	29
CGAGACT	225	0.0	38.0	23
CCCTCTG	30	1.1345392E-4	37.500004	9
GCCCACG	235	0.0	37.340427	18
TCTCGTA	235	0.0	37.340427	38
TATACAT	235	0.0	37.340427	32
ACTGTTA	230	0.0	37.173912	27
GTATGCC	240	0.0	36.562504	42
ACGAGAC	250	0.0	36.000004	22
AACCGTG	25	0.0021004758	36.0	7
GTCGCGC	50	4.8241418E-8	36.0	8