H23LNBCXX_l02n01_bir_0113_pc_49.35100000045564.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_49.35100000045564.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	89555
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACCGCTGATCTCGTATGCCGTC	7749	8.652783205851152	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTACCGCTGATCTCGTATGCCGT	982	1.0965328569035788	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTACCGCTGATCTCGTATGCCG	243	0.271341633632963	No Hit
TTATACACATCTCCGAGCCCACGAGACTACCGCTGATCTCGTATGCCGTCT	214	0.23895929875495506	No Hit
ATTTGATTCCATTTGATGTTGATTCCATTCGATTCCATTTTATGATGATTC	173	0.19317737703087487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTCAC	30	2.1432588E-6	44.999443	24
CTACCCG	25	3.862248E-5	44.999443	5
GGCATGG	25	3.862248E-5	44.999443	45
CGACTAG	25	3.862248E-5	44.999443	35
TCACACG	20	6.9988857E-4	44.99944	29
CGTCTTC	20	6.9988857E-4	44.99944	45
GGTCACT	20	6.9988857E-4	44.99944	25
CGAAGAC	20	6.9988857E-4	44.99944	34
TGCCGTC	810	0.0	40.27728	45
TACCCGA	30	1.13161994E-4	37.49954	6
GAATGGC	30	1.13161994E-4	37.49954	41
AAACGAC	30	1.13161994E-4	37.49954	32
AACGACT	30	1.13161994E-4	37.49954	33
ACCCGAA	30	1.13161994E-4	37.49954	7
CCCGAAT	30	1.13161994E-4	37.49954	8
ATATACG	25	0.002091153	36.01967	1
TGTTTGC	25	0.0020968993	35.999554	34
AGCAACC	25	0.0020968993	35.999554	14
GCAACCA	25	0.0020968993	35.999554	15
TTATGGA	25	0.0020968993	35.999554	43