H23LNBCXX_l02n01_bir_0113_pc_45.351000000454ec.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_45.351000000454ec.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	349895
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGTC	7532	2.152645793738121	RNA PCR Primer, Index 20 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCGT	3326	0.9505708855513797	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTGTGGACATCTCGTATGCCG	571	0.16319181468726332	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	770	0.0	42.953728	45
TAGCCTA	40	1.5561569E-5	33.75418	4
ACGTAGC	35	2.8143474E-4	32.14684	1
CGGGCAC	35	2.8167095E-4	32.142242	34
ATGCCGT	1060	0.0	30.989977	44
CGTAGCC	45	3.4810328E-5	30.003717	2
GCCTAGA	45	3.4810328E-5	30.003717	6
TATAAAA	45	3.4810328E-5	30.003717	2
ATAGGGC	30	0.0051429025	29.999428	41
TATGCCG	1100	0.0	29.86307	43
GTATGCC	1110	0.0	29.59403	42
CGTATGC	1135	0.0	29.140415	41
CGAGACC	1165	0.0	28.583147	23
CTCGTAT	1150	0.0	28.564674	39
TCGTATG	1160	0.0	28.51239	40
ACCTGTG	1135	0.0	28.347479	27
GGCGGTA	40	6.15819E-4	28.124464	40
ATCGGGC	40	6.15819E-4	28.124464	36
GGACATC	1170	0.0	28.07639	33
TGGACAT	1165	0.0	28.003757	32