H23LNBCXX_l02n01_bir_0113_pc_33.35100000045366.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_33.35100000045366.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	137463
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC	8414	6.120919811149182	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGT	1651	1.2010504644886262	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCG	601	0.4372085579392273	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	155	0.11275761477633982	No Hit
GTACGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	150	0.10912027236419983	No Hit
GAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	143	0.10402799298720383	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACGCT	20	7.011885E-4	44.999638	28
CGTTCAA	20	7.011885E-4	44.999638	12
TGCACGC	20	7.011885E-4	44.999638	27
TGCCGTC	835	0.0	43.921803	45
TGGACTC	30	1.13475515E-4	37.499695	35
ATGCCGT	975	0.0	37.384315	44
TCGTTCA	25	0.002100758	35.999706	11
GGACTCA	25	0.002100758	35.999706	36
CTCCCAT	25	0.002100758	35.999706	30
TCTCCCA	25	0.002100758	35.999706	29
CGTATGC	1030	0.0	35.60651	41
CTCGTAT	1035	0.0	35.434498	39
TATGCCG	1030	0.0	35.388065	43
CGAGACA	1045	0.0	35.31072	23
ATCTCGT	1035	0.0	35.217106	37
GTATGCC	1035	0.0	35.217106	42
GGATGTG	1030	0.0	35.16962	30
GATCTCG	1030	0.0	35.16962	36
TCTCGTA	1045	0.0	35.09541	38
TCGTATG	1045	0.0	35.09541	40