H23LNBCXX_l02n01_bir_0113_pc_2.35100000044f7a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_2.35100000044f7a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25788
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTC	13368	51.83806421591438	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGT	1471	5.704203505506436	RNA PCR Primer, Index 44 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCG	526	2.0397083914999223	No Hit
TTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCT	154	0.5971769815418024	RNA PCR Primer, Index 44 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCG	33	0.12796649604467195	No Hit
CTTATACACATCTCCGAGCCACGAGACCCTAGAATATCTCGTATGCCGTCT	27	0.10469986040018613	RNA PCR Primer, Index 44 (95% over 23bp)
CTTATACACATCTCCGAGCCCACGAGACCCTAGAATATTCGTATGCCGTCT	26	0.10082208779277184	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1400	42.910713	45
GCCGTCT	65	41.53846	45
ATGCCGT	1555	38.633442	44
CTCCGAG	1620	37.916668	12
TCCGAGC	1615	37.894737	13
CCACGAG	1610	37.73292	20
CACGAGA	1605	37.71028	21
ACGAGAC	1605	37.71028	22
TCTCCGA	1630	37.684048	11
CGAGCCC	1625	37.661537	15
CCGAGCC	1625	37.661537	14
GAGCCCA	1625	37.523075	16
ATCTCCG	1645	37.477203	10
GCCCACG	1615	37.47678	18
GAGACCC	1610	37.45342	24
AGCCCAC	1625	37.384613	17
CCCACGA	1620	37.36111	19
CGAGACC	1620	37.36111	23
AGACCCT	1615	37.33746	25
GACCCTA	1620	37.22222	26