H23LNBCXX_l02n01_bir_0113_pc_11.351000000450ad.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_11.351000000450ad.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	357026
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	10302	2.885504136953611	RNA PCR Primer, Index 45 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGT	1655	0.46355167410776804	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	422	0.1181986746063312	No Hit
GGTATAGGTCGCGCGCTTAAGCGCCATCCATTTTCGGGGCTAGTTGATTCG	416	0.11651812473041179	No Hit
GTATCAACGCAGAGTACGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAA	407	0.11399729991653268	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCG	386	0.10811537535081478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1075	0.0	41.230762	45
ATGCCGT	1245	0.0	35.600857	44
TATGCCG	1275	0.0	34.76319	43
GTATGCC	1285	0.0	34.66775	42
CGTATGC	1295	0.0	34.400043	41
CTCGTAT	1290	0.0	34.358967	39
ATTAATC	1300	0.0	34.26774	33
GACGTTC	1295	0.0	34.05257	26
CATTAAT	1325	0.0	33.79098	32
GTATTAA	40	1.5535536E-5	33.76272	1
CGAGACG	1320	0.0	33.748528	23
CGTTCAT	1315	0.0	33.705753	28
ACGTTCA	1310	0.0	33.662655	27
TCTCGTA	1320	0.0	33.578083	38
GTTCATT	1320	0.0	33.578083	29
TCATTAA	1335	0.0	33.537865	31
TTCATTA	1315	0.0	33.53466	30
AGACGTT	1320	0.0	33.407635	25
TCGTATG	1340	0.0	33.24482	40
AATCTCG	1335	0.0	33.2008	36