H23LNBCXX_l02n01_bir_0113_pc_1.35100000044f51.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pc_1.35100000044f51.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17842
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTC	5405	30.29368904831297	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGT	441	2.4716959982064792	RNA PCR Primer, Index 44 (95% over 21bp)
TTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCT	143	0.8014796547472256	RNA PCR Primer, Index 44 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCG	128	0.717408362291223	No Hit
ATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCTTC	127	0.7118036094608228	RNA PCR Primer, Index 37 (95% over 23bp)
TATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCTT	47	0.2634233830288084	RNA PCR Primer, Index 37 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCT	23	0.1289093150992041	RNA PCR Primer, Index 44 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	670	41.30597	45
CGAGCCC	725	38.793102	15
TCCGAGC	725	38.793102	13
CTCCGAG	725	38.793102	12
AGCCCAC	720	38.75	17
GCCCACG	720	38.75	18
CCACGAG	720	38.75	20
CACGAGA	720	38.75	21
CCCACGA	720	38.75	19
ACGAGAC	720	38.75	22
ACCCTAG	720	38.75	27
GACCCTA	720	38.75	26
ATGCCGT	715	38.706295	44
GAATATC	715	38.706295	33
CTAGAAT	715	38.706295	30
TAGAATA	710	38.66197	31
GAGCCCA	730	38.527397	16
CCGAGCC	730	38.527397	14
GAGACCC	730	38.527397	24
CGTATGC	725	38.482758	41