H23LNBCXX_l02n01_bir_0113_pb_96.35100000044f37.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_96.35100000044f37.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35021
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTC	9133	26.078638531167016	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGT	630	1.7989206476114332	RNA PCR Primer, Index 41 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTTC	400	1.142171839753291	RNA PCR Primer, Index 34 (95% over 23bp)
TTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	323	0.9223037606007823	RNA PCR Primer, Index 41 (95% over 23bp)
CTCTTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCG	152	0.43402529910625054	No Hit
TATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCTT	112	0.31980811513092144	RNA PCR Primer, Index 34 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACTCGACGGCATCTCGTATGCCGTCT	52	0.1484823391679278	RNA PCR Primer, Index 41 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCTT	30	2.105582E-6	45.000004	44
TGCCGTC	980	0.0	42.015305	45
ATGCCGT	1045	0.0	39.401913	44
CGTATGC	1095	0.0	38.013702	41
ACTCGAC	1105	0.0	37.873302	27
CACGAGA	1105	0.0	37.873302	21
AGACTCG	1105	0.0	37.873302	25
GACTCGA	1105	0.0	37.873302	26
AGCCCAC	1100	0.0	37.840908	17
CCCACGA	1100	0.0	37.840908	19
CGAGCCC	1100	0.0	37.840908	15
TCGTATG	1100	0.0	37.840908	40
GTATGCC	1095	0.0	37.808224	42
TCTCGTA	1095	0.0	37.808224	38
CTCGTAT	1095	0.0	37.808224	39
TATGCCG	1090	0.0	37.77523	43
ACGAGAC	1110	0.0	37.7027	22
CGAGACT	1110	0.0	37.7027	23
TCCGAGC	1110	0.0	37.7027	13
GAGACTC	1110	0.0	37.7027	24