H23LNBCXX_l02n01_bir_0113_pb_80.35100000044d46.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_80.35100000044d46.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47894
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTC	16958	35.407357915396496	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGT	2526	5.274147074790162	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCG	399	0.8330897398421515	No Hit
TTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCT	352	0.7349563619660082	No Hit
ATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTTC	301	0.6284712072493424	Illumina PCR Primer Index 7 (95% over 22bp)
TATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTT	85	0.17747525786110996	Illumina PCR Primer Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCG	61	0.12736459681797302	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTC	55	1.8189894E-12	44.99895	45
TGCCGTC	1840	0.0	41.6974	45
TTACTTC	25	0.002087272	35.999165	27
ATGCCGT	2155	0.0	35.60242	44
CTCCGAG	2195	0.0	35.363644	12
TCCGAGC	2200	0.0	35.28327	13
TCTCCGA	2205	0.0	35.203262	11
CGAGCCC	2200	0.0	35.181004	15
CCGAGCC	2200	0.0	35.181004	14
GAGCCCA	2195	0.0	35.158638	16
AGCCCAC	2190	0.0	35.13617	17
GCCCACG	2190	0.0	35.13617	18
CACGAGA	2205	0.0	35.101223	21
GAGACTC	2205	0.0	35.101223	24
CCACGAG	2200	0.0	35.07873	20
CCCACGA	2200	0.0	35.07873	19
CGTATGC	2200	0.0	35.07873	41
TCGTATG	2200	0.0	35.07873	40
AGACTCT	2200	0.0	35.07873	25
TCTGGAC	2195	0.0	35.056133	29