H23LNBCXX_l02n01_bir_0113_pb_77.35100000044cda.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_77.35100000044cda.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	178341
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTC	113125	63.4318524624175	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGT	13693	7.677987675296202	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCG	4858	2.7239950432037503	No Hit
TTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCT	696	0.3902635961444648	No Hit
CTTATACACATCTCCGAGCCCACGAGACCCTGGACCATCTCGTATGCCGTC	358	0.20073903364902068	No Hit
ATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCCGTCTTC	225	0.12616280047773648	Illumina PCR Primer Index 7 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACTCTGGACCATCTCGTATGCTGTC	196	0.10990181730505043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTGGAC	40	6.7611836E-9	44.99804	29
TGCCGTC	11900	0.0	44.090515	45
CGAGACC	80	0.0	42.18566	23
CCCTGGA	55	6.002665E-11	40.907307	28
GAGACCC	80	0.0	39.373283	24
ATGCCGT	13410	0.0	39.12581	44
GACCCTG	75	0.0	38.9983	26
AGACCCT	75	0.0	38.9983	25
CGTCTTC	35	6.220507E-6	38.569748	45
TCCGAGC	14065	0.0	37.511692	13
TCTCGTA	14035	0.0	37.495693	38
CCACGAG	14080	0.0	37.487713	20
CTCCGAG	14080	0.0	37.487713	12
CCCACGA	14075	0.0	37.485046	19
ATCTCGT	14010	0.0	37.482307	37
CACGAGA	14090	0.0	37.47707	21
CTCGTAT	14030	0.0	37.46095	39
TATGCCG	14025	0.0	37.458256	43
GCCCACG	14080	0.0	37.455753	18
ACGAGAC	14095	0.0	37.44782	22