H23LNBCXX_l02n01_bir_0113_pb_70.35100000044bf5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_70.35100000044bf5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	139266
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCGTC	78691	56.50410006749673	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCGT	9188	6.5974466129565	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCG	3724	2.6740195022474973	No Hit
TTATACACATCTCCGAGCCCACGAGACTCGCTATGATCTCGTATGCCGTCT	457	0.32814900980856776	No Hit
CTTATACACATCTCCGAGCCCACGAGACTCGCTATGATTTCGTATGCCGTC	147	0.10555340140450649	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGATAT	25	3.87311E-5	45.0	34
TGCCGTC	8360	0.0	44.16567	45
TGCAGTC	40	3.4291224E-7	39.375004	45
ATGCCGT	9375	0.0	39.336	44
GCCGTCT	145	0.0	38.793102	45
CTATGAT	9770	0.0	37.883827	32
TATGATC	9730	0.0	37.877697	33
CGCTATG	9775	0.0	37.86445	30
CACGAGA	9830	0.0	37.8586	21
ACGAGAC	9830	0.0	37.8586	22
CGAGACT	9810	0.0	37.84404	23
ATCTCGT	9760	0.0	37.83043	37
GATCTCG	9750	0.0	37.82308	36
GACTCGC	9800	0.0	37.813774	26
TATGCCG	9765	0.0	37.81106	43
CCACGAG	9825	0.0	37.80916	20
AGACTCG	9785	0.0	37.80276	25
ATGATCT	9750	0.0	37.8	34
GCTATGA	9780	0.0	37.79908	31
TCGCTAT	9780	0.0	37.79908	29