H23LNBCXX_l02n01_bir_0113_pb_64.35100000044b3b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_64.35100000044b3b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22612
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	9758	43.15407748098355	RNA PCR Primer, Index 39 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	433	1.9149124358747567	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	431	1.9060675747390767	No Hit
TTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTCT	49	0.21669909782416416	RNA PCR Primer, Index 39 (100% over 21bp)
GCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	29	0.12825048646736248	No Hit
CTTATACACATCTCCGAGCCACGAGACTGTTATACATCTCGTATGCCGTCT	26	0.1149831947638422	RNA PCR Primer, Index 39 (100% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1060	42.877357	45
ATGCCGT	1095	41.506847	44
CTCCGAG	1135	41.035244	12
CCGAGCC	1140	40.855263	14
GAGCCCA	1135	40.837006	16
CGAGCCC	1145	40.676853	15
AGCCCAC	1140	40.657894	17
TCTCCGA	1140	40.657894	11
TCCGAGC	1150	40.5	13
GCCCACG	1145	40.480347	18
CACGAGA	1140	40.460526	21
CCCACGA	1140	40.460526	19
ACGAGAC	1140	40.460526	22
CGAGACT	1140	40.460526	23
GAGACTG	1135	40.440533	24
TATGCCG	1125	40.4	43
ACTGTTA	1140	40.263157	27
ATCTCGT	1140	40.263157	37
CATCTCG	1140	40.263157	36
TGTTATA	1140	40.263157	29