H23LNBCXX_l02n01_bir_0113_pb_61.35100000044ae9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_61.35100000044ae9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	358433
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGTC	8505	2.3728283947069606	RNA PCR Primer, Index 39 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCGT	1577	0.4399706500238539	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTTATACATCTCGTATGCCG	941	0.2625316307371252	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCTGTCTCTTATAC	522	0.14563391205608858	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACTGTCTCTTATACA	494	0.1378221313327735	No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATAC	481	0.13419523313980578	No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATACA	433	0.12080360904269417	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	940	42.604797	45
ATGCCGT	1100	36.612274	44
TATGCCG	1185	33.98608	43
GTATGCC	1205	33.421993	42
CATCTCG	1215	32.776558	36
TGTTATA	1205	32.675133	29
TATACAT	1220	32.642227	32
CGTATGC	1245	32.52891	41
ACTGTTA	1205	32.48842	27
TCTCGTA	1240	32.47863	38
CTCGTAT	1245	32.348194	39
TCGTATG	1255	32.269714	40
GTTATAC	1230	32.011005	30
ATCTCGT	1270	31.71142	37
CGAGACT	1280	31.287899	23
CTGTTAT	1260	31.248838	28
ATACATC	1275	31.234133	33
TACATCT	1290	31.045357	34
ACGAGAC	1315	30.797335	22
CACGAGA	1365	29.669224	21