H23LNBCXX_l02n01_bir_0113_pb_5.351000000443d3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_5.351000000443d3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56205
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTC	13140	23.378702962369896	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGT	611	1.0870918957388132	RNA PCR Primer, Index 44 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCG	603	1.0728582866293035	No Hit
TTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGTCT	89	0.15834890134329688	RNA PCR Primer, Index 44 (95% over 23bp)
GCTTATACACATCTCCGAGCCCACGAGACCCTAGAATATCTCGTATGCCGT	71	0.12632328084689975	No Hit
GGTATCAACGCAGAGTACGGGGTGGTATCCTGTCTCTTATACACATCTCCG	59	0.104972867182635	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	1460	43.60784	45
GAGACCC	1540	41.63467	24
ATGCCGT	1530	41.612713	44
CCCACGA	1560	41.533535	19
ACGAGAC	1560	41.533535	22
CGAGACC	1545	41.49993	23
AGCCCAC	1575	41.42366	17
CACGAGA	1555	41.377728	21
GACCCTA	1550	41.366062	26
GCCCACG	1575	41.28082	18
CCACGAG	1565	41.257084	20
ACCCTAG	1555	41.23305	27
CTAGAAT	1555	41.23305	30
CCTAGAA	1550	41.220917	29
CCCTAGA	1550	41.220917	28
TAGAATA	1550	41.220917	31
AGACCCT	1560	41.10089	25
GAATATC	1560	40.95668	33
CTCGTAT	1560	40.95668	39
AGAATAT	1565	40.82583	32