FastQCFastQC Report
Fri 12 Feb 2016
H23LNBCXX_l02n01_bir_0113_pb_40.3510000004483e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH23LNBCXX_l02n01_bir_0113_pb_40.3510000004483e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53
Sequences flagged as poor quality0
Sequence length51
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGTC59.433962264150944No Hit
TATCAACGCAGAGTACGGGACGAATGGCGTAATGATGGCCAGGCTGTCTCC11.8867924528301887No Hit
AGCTAACCTTGAGGGCAACGTGATCAAAGAGTACAAACACTTTCTTTTCCA11.8867924528301887No Hit
CCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGG11.8867924528301887No Hit
GTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCCTGTCTCTTATACAC11.8867924528301887No Hit
CTCTAAACCATACAGCAACAAAACCGTTGCCATCACTGTCTCTTATACACA11.8867924528301887No Hit
CAAAGAAGGAGATAAAAAAAACAGGGAGAACAATTCAGTTATGCAGAAAGA11.8867924528301887No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTGTCTTATCTCGTATGCCGTC11.8867924528301887No Hit
TGGAAATCCTTGTCTTGTTCCTAAGTAGTAAGACTTCCTCTGATCTGTCTC11.8867924528301887No Hit
GGAATAATACTATCGCTGTTCATTATAGCTACTCTCATAACCCCTGTCTCT11.8867924528301887No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGATGTGATATCGTATGCCGT11.8867924528301887No Hit
CTTATACACATCTCCGAGCCCACGAGCTAAGCATGATCTCGTATGCCGTCT11.8867924528301887No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGGATGTGATCTCGTATGCCGT11.8867924528301887No Hit
GGTTAATATTCCTGTACTTGGTGTTACTGCTGTCTCTTATACACATCTCCG11.8867924528301887No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA11.8867924528301887No Hit
TCACACCCGTAACACCGGGCAATAAAAAATTATTATCGAGCATCCGTGAAG11.8867924528301887No Hit
GTTCTATCGGGTAAAGCCAATGATTAGAGGCTGTCTCTTATACACATCTCC11.8867924528301887No Hit
GTATCAACGCAGAGTACGGGTGGTATCAACGCCTGTCTCTTATACACATCT11.8867924528301887No Hit
ATGGAAGGATCTTATCAACGTCCATGAATGATAAATCATAGCATCTGTCTC11.8867924528301887No Hit
CCTCACGGTACTGGTTCACTATCAGTCAGTCAGGAGTATTTAGCCTTGGAG11.8867924528301887No Hit
GACATGGATAAAGTCATATGTATAGCTCCAATCTGAGAAAAGAGTTCCTTT11.8867924528301887No Hit
TCTTATACACATCACCGAGCCCATGAGACAGGATGTGATCTCGTATGGCGT11.8867924528301887No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGCGTTATCTCGTATGCCGTC11.8867924528301887No Hit
CCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTCTGTCTC11.8867924528301887No Hit
TTGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGCAGGCTTA11.8867924528301887No Hit
GTGCTGTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTTCAACCCCTT11.8867924528301887No Hit
GCTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTGATACC11.8867924528301887No Hit
GAATACCGGAGAATGTTATCACGGGAGACACACGGCGGGTGCTAACGTCCG11.8867924528301887No Hit
CTTATACACATCTCCGAGCCCACGAGCTCGCTATGATCTCGTATGCCGTCT11.8867924528301887No Hit
CACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGCCCTGTCTCT11.8867924528301887No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTTT11.8867924528301887No Hit
CAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCCTGTCTCTTATACACATC11.8867924528301887No Hit
CTTGTTTAGGATAGATCAGGCTTGGATTCTTGATCTTTCCTTTGTTTGCAT11.8867924528301887No Hit
CCAACAAATGGAGGAAGTTTAGAACTTTCTTTGCTTTTCTTTTATACCACT11.8867924528301887No Hit
GATACAAATTCACATTTCACACATGATATCTAATAAAGCCCCTATCCTGTC11.8867924528301887No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTC11.8867924528301887No Hit
CCTAAAGATTGTTCAAACTTAGACTGACAATATCTAGACTTCCCTGTCTGT11.8867924528301887No Hit
GTTGTGTTCCCACTTGATGATGATGATGATGATGATGACTGTCTCTTATAA11.8867924528301887No Hit
TGTCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAGACAGACGGT11.8867924528301887RNA PCR Primer, Index 27 (96% over 28bp)
GGATATTGGCTTAGAAGCAGCCATCATTTAAAGAAAACTGTCTCTTATACA11.8867924528301887No Hit
CCACTGTTTCCTCATTGATTTTCTGCCTAGATGATTTATCCATTGATGTAA11.8867924528301887No Hit
GGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGC11.8867924528301887No Hit
TATAACCGGCGATTTCCGAATGGGGAAACCCAGTGGGTTTCGACACACTAT11.8867924528301887No Hit
AACCAATGATGTAATGATTCTGCCAAATGAAATATCTGTCTCTTATACACA11.8867924528301887No Hit
ATATTTCAACTTCTATGCTAGGAAGATCAAAGTACAACTTGAACTCTCTCT11.8867924528301887No Hit
GAATTGAAGATGAATTTTAGTACGATGACTAGGGTCTGTCTCTTATACACA11.8867924528301887No Hit
ATATGGTGAAACCCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGA11.8867924528301887No Hit
GGTTGCGCCTGCCCTCGGGCCCTCACGGAGGCGGGGGTTCCAGGGCACGAG11.8867924528301887No Hit
TAGCAGCCCAGAGCCTGAATCAGAGAGTGTGGTAGGAGAAGCATCTCGAAA11.8867924528301887No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCATTA50.045.019
TGTCTCT50.045.045
CCTGTCT50.045.043
AGCTACT50.045.027
TATCGCT50.045.011
CTCTCAT50.045.032
TAGCTAC50.045.026
TGTTCAT50.045.017
GTTCATT50.045.018
ACTCTCA50.045.031
AACCCCT50.045.039
TTATAGC50.045.023
GCTACTC50.045.028
ATAACCC50.045.037
ATAATAC50.045.04
CATTATA50.045.021
ATTATAG50.045.022
ATAGCTA50.045.025
GCTGTTC50.045.015
TAACCCC50.045.038