H23LNBCXX_l02n01_bir_0113_pb_24.3510000004464d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_24.3510000004464d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22675
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGTC	5561	24.524807056229328	RNA PCR Primer, Index 23 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGT	466	2.0551267916207276	No Hit
TTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGTCT	192	0.8467475192943771	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCG	117	0.5159867695700111	No Hit
ATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGTCTTC	104	0.45865490628445427	RNA PCR Primer, Index 23 (95% over 24bp)
TATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCGTCTT	49	0.2160970231532525	RNA PCR Primer, Index 23 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGAGTTGATCTCGTATGCCG	25	0.11025358324145534	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	700	40.82143	45
ATCTCGT	760	37.894737	37
TCGTATG	760	37.894737	40
TGATCTC	755	37.847683	35
TTGATCT	755	37.847683	34
TCTCCGA	750	37.8	11
AGCCCAC	765	37.647057	17
TCTCGTA	765	37.647057	38
CGTATGC	765	37.647057	41
CCGAGCC	765	37.647057	14
TCCGAGC	765	37.647057	13
CTCGTAT	765	37.647057	39
CTCCGAG	765	37.647057	12
GTTGATC	760	37.598682	33
GTATGCC	760	37.598682	42
GCCCACG	760	37.598682	18
CACGAGA	760	37.598682	21
CCCACGA	760	37.598682	19
AGAGTTG	760	37.598682	30
ACGAGAG	760	37.598682	27