H23LNBCXX_l02n01_bir_0113_pb_16.3510000004454e.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pb_16.3510000004454e.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25085
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTC	7419	29.57544349212677	RNA PCR Primer, Index 45 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGT	698	2.782539366155073	No Hit
TTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCT	233	0.9288419374127965	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCG	208	0.8291807853298784	No Hit
ATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCTTC	42	0.16743073549930237	RNA PCR Primer, Index 45 (95% over 24bp)
TATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCGTCTT	35	0.1395256129160853	RNA PCR Primer, Index 45 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACGTTCATTAATCTCGTATGCCG	26	0.1036475981662348	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	800	41.0625	45
ATGCCGT	860	38.197674	44
GCCCACG	885	37.62712	18
TATGCCG	875	37.54286	43
AGCCCAC	890	37.41573	17
CACGAGA	890	37.41573	21
CCCACGA	890	37.41573	19
ACGAGAC	890	37.41573	22
CGAGACG	890	37.41573	23
CATTAAT	885	37.372883	32
CGTATGC	885	37.372883	41
TCGTATG	885	37.372883	40
GTATGCC	880	37.329544	42
AATCTCG	880	37.329544	36
ATCTCGT	880	37.329544	37
GACGTTC	880	37.329544	26
TCATTAA	880	37.329544	31
GAGACGT	880	37.329544	24
TTCATTA	875	37.285713	30
GTTCATT	875	37.285713	29