H23LNBCXX_l02n01_bir_0113_pa_62.35100000043ef5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pa_62.35100000043ef5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	378787
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	195645	51.650399828927604	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGT	60898	16.077109298893575	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	19974	5.273148233703902	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACTGTCTCTTATACA	563	0.14863234482704002	No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATACA	549	0.14493633625230012	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCTGTCTCTTATAC	465	0.12276028480386074	No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCCTGTCTCTTATAC	458	0.1209122805164908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACATC	20	7.0234324E-4	45.005016	6
GTATGCT	50	2.1827873E-11	44.999073	42
TATGTCG	20	7.028003E-4	44.999073	44
TGCCGTC	20125	0.0	44.74194	45
TATGCTG	50	1.0768417E-9	40.499165	43
TCTACGA	30	1.13861504E-4	37.499226	11
CTACGAG	30	1.13861504E-4	37.499226	12
TGCGTAA	30	1.13861504E-4	37.499226	19
GCCGTCT	105	0.0	36.427826	45
ATATACA	25	0.0021041774	36.004013	4
TATACAT	25	0.0021041774	36.004013	5
GCCCCAC	25	0.0021055415	35.99926	18
CATGGCG	25	0.0021055415	35.99926	29
ATCTCAT	25	0.0021055415	35.99926	37
GCCCACA	25	0.0021055415	35.99926	18
CATATGC	25	0.0021055415	35.99926	41
AGCCCCA	25	0.0021055415	35.99926	17
AGCTTGC	25	0.0021055415	35.99926	15
GACCATG	25	0.0021055415	35.99926	26
GAGACTA	25	0.0021055415	35.99926	24