H23LNBCXX_l02n01_bir_0113_pa_6.351000000437fc.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pa_6.351000000437fc.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	182604
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGTC	2796	1.5311822304002103	RNA PCR Primer, Index 27 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGAATTGCTATCTCGTATGCCGT	415	0.2272677487897308	No Hit
ATATAATTCTCTTCTTCACATACAGCAGTTTAGATTCACAATACAACAAGC	307	0.1681233707914394	No Hit
ATATAATTCTCTTCTTCACATACAGCGGTTTAGATTCACAATACAACAAGC	293	0.16045650697684605	No Hit
ATATATGATTGACCATAACACGATGTGATTACAATCAATTACAAAGCCAAA	273	0.1495038443845699	No Hit
CTTTACATCCTCATATTCATCTGTTAATTTGGCTTTGTAATTGATTGTAAT	247	0.13526538301461083	No Hit
GTATAGGTAAGCATTGCATGCTTATAAACCGATGTATGCAAGTAATAACTC	204	0.11171715844121707	No Hit
CTTATAAACCGATGTATGCAAGTAATAACTCTGTAAAAAAACGTTACAGAT	183	0.10021686271932707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATATA	20	7.001917E-4	45.020546	2
TATGGGA	25	3.8799757E-5	44.99589	10
TGCCGTC	285	0.0	41.838287	45
CAGCGGT	40	3.439418E-7	39.371407	23
TACAGCG	40	3.439418E-7	39.371407	21
TAGGATA	35	6.199991E-6	38.589043	4
AAGCGCC	35	6.2233667E-6	38.567905	19
GTATTAT	30	1.12763926E-4	37.54799	1
TATACTA	30	1.133114E-4	37.517124	5
CTATGGG	30	1.136776E-4	37.49658	9
ACTATGG	30	1.136776E-4	37.49658	8
GTATGCC	340	0.0	35.070328	42
GCGCCAT	45	8.6529326E-7	34.996807	21
CGTATGC	345	0.0	34.562065	41
CCCACGA	345	0.0	34.562065	19
ATGCCGT	345	0.0	34.562065	44
TATGCCG	350	0.0	34.068317	43
GAATTGC	350	0.0	34.068317	29
GGTCGCG	40	1.5543874E-5	33.746918	7
GCTATCT	355	0.0	33.588486	34