H23LNBCXX_l02n01_bir_0113_pa_57.35100000043e55.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pa_57.35100000043e55.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35833
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	7843	21.887645466469454	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGT	927	2.587000809309854	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	240	0.6697736723132308	No Hit
ATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCTTC	128	0.3572126252337231	RNA PCR Primer, Index 46 (95% over 22bp)
TTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCT	49	0.1367454580972846	No Hit
TATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTCTT	48	0.13395473446264616	RNA PCR Primer, Index 46 (95% over 21bp)
ATCGTATAGTGGTAGAAAAGTGTATGTGGTAGGGGTTATCAAAAAACAAGG	45	0.12558256355873076	No Hit
AATATAGGTTTCCTCAACTGTAATGGGTAATATGCCCGATTCAAAGTATCC	42	0.1172103926548154	No Hit
GAAGAGAATCGATTAGAATCGAAATGAAAAGAATCGTATTGAATCGAATCG	42	0.1172103926548154	No Hit
GATATACATCGTGCAATGAACCAAGAAGAAAGACTCAGTAGATACCAACTG	40	0.11162894538553846	No Hit
TTGTGTATCCTTTTGCTTGTTTTTTGTTGTGATAGTCTTTGAGTTACTCAA	40	0.11162894538553846	No Hit
AAAATGAATTCTCAACCAGGTTGATGTTATTGCTGCTGAAGGATTTATTGT	39	0.10883822175090001	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	36	0.10046605084698462	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGATAC	20	6.941998E-4	45.0	3
CACAAGC	20	6.941998E-4	45.0	29
CAAAGTC	20	6.941998E-4	45.0	9
CAGGATA	20	6.941998E-4	45.0	2
TCACAAG	20	6.941998E-4	45.0	28
AAGCATT	25	3.815345E-5	44.999996	32
TGCCGTC	965	0.0	41.96891	45
ATGCCGT	1060	0.0	38.207546	44
AATCTCG	1085	0.0	37.53456	36
ATCTCGT	1085	0.0	37.53456	37
TCTCGTA	1085	0.0	37.53456	38
CGTATGC	1085	0.0	37.53456	41
GTATGCC	1085	0.0	37.32719	42
GAATCTC	1080	0.0	37.291668	35
CGAATCT	1075	0.0	37.255814	34
TCGTATG	1095	0.0	37.191784	40
CTCGTAT	1095	0.0	37.191784	39
TATGCCG	1090	0.0	37.15596	43
GAGACCA	1080	0.0	37.083336	24
ATCTCCG	1100	0.0	37.022728	10