H23LNBCXX_l02n01_bir_0113_pa_52.35100000043db2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pa_52.35100000043db2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	275026
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	7936	2.8855453666198834	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGT	3091	1.1238937409554006	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCG	592	0.2152523761389832	No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAAC	428	0.15562165031669734	No Hit
AAAAAGTACTCTGCGTTGATACCCCGTACTCTGCGTTGATACCTGTCTCTT	310	0.1127166158835892	No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACC	285	0.1036265662155578	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	278	0.10108135230850901	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	790	0.0	43.57366	45
CTAGGAC	25	0.0021011152	36.011208	3
TAGGACA	40	1.5529562E-5	33.7605	4
ACCTATA	35	2.8067012E-4	32.15871	1
CTGTCCA	35	2.8157042E-4	32.14117	9
CGGGACA	35	2.8157042E-4	32.14117	17
ATGCCGT	1090	0.0	31.58091	44
GTGTAAT	45	3.4695906E-5	30.014797	1
CGTATGC	1215	0.0	28.331844	41
TATGCCG	1215	0.0	28.14667	43
CTCGTAT	1225	0.0	28.100565	39
TATCTCG	1225	0.0	28.100565	36
TCGTATG	1225	0.0	28.100565	40
CGAGACG	1220	0.0	28.031313	23
GTATGCC	1225	0.0	27.916903	42
CCTATCT	1245	0.0	27.829863	34
TCTCGTA	1250	0.0	27.718546	38
ATCTCGT	1250	0.0	27.538555	37
ACGAGAC	1250	0.0	27.538555	22
AACCTAT	1245	0.0	27.468435	32