H23LNBCXX_l02n01_bir_0113_pa_28.35100000043ab5.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l02n01_bir_0113_pa_28.35100000043ab5.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	455599
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGTC	20243	4.4431616399509215	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCGT	4290	0.9416175189146596	No Hit
ATATACAGCCTGTTGAATCAAATAGACAGGTATGAGCCAACCTAGCGAACT	1388	0.3046538732525752	No Hit
ACATAAAAGCAAAACTATAGGCTGTCTTTACTTAGCAAATAAGCAGACTAG	996	0.21861329809766922	No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAAC	939	0.20610229609810382	No Hit
GGATACAGCTAGTAGCTTTCCACTTTCGACTACAGGACTTTTACCTTCTTT	785	0.1723006415729622	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGCAGAATCTCGTATGCCG	728	0.15978963957339679	No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACC	614	0.13476763557426596	No Hit
AGATAAATCTATCGGTTTAGGCTCTTCCCCTTTCGCTCACCACTACTTGGG	601	0.13191424915331246	No Hit
ACTTGGGGAATCTCGTTTGATTTCTTTTCCTCTAGCTACTAAGATGTTTCA	555	0.12181765104840002	No Hit
GGTAATTTTGGCTTAACGTGTTTAGAGCTTTTCTTGGAAGCTTGATTGTTT	540	0.11852528210114596	No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCA	532	0.1167693519959438	No Hit
CCCGATATACAGCCTGTTGAATCAAATAGACAGGTATGAGCCAACCTAGCG	531	0.11654986073279354	No Hit
CCGATATACAGCCTGTTGAATCAAATAGACAGGTATGAGCCAACCTAGCGA	494	0.10842868399623352	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	486	0.10667275389103137	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCTGTCTCTTATAC	478	0.10491682378582921	No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCACTGCTTCCCGT	466	0.10228292862802596	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCTGGA	20	7.0184993E-4	45.013393	1
TGCCGTC	2190	0.0	43.97121	45
GCCGTCT	45	1.9244908E-8	39.998734	45
ATGCCGT	2610	0.0	36.895382	44
CGTAAAG	25	0.002106104	35.99886	40
CCTTGCC	25	0.002106104	35.99886	28
TATGCCG	2690	0.0	35.798122	43
GCAGAAT	2680	0.0	35.763794	32
ACGAGAC	2715	0.0	35.717102	22
CTCGTAT	2710	0.0	35.699974	39
CAGAATC	2700	0.0	35.665535	33
AGACCTT	2715	0.0	35.63423	25
TCGTATG	2715	0.0	35.63423	40
TGCAGAA	2685	0.0	35.613396	31
CGTATGC	2720	0.0	35.568726	41
GACCTTG	2715	0.0	35.55136	26
CCACGAG	2735	0.0	35.455914	20
CCTTGCA	2710	0.0	35.36788	28
GAGACCT	2755	0.0	35.280186	24
TTGCAGA	2730	0.0	35.02636	30