H23LNBCXX_l01n01_bir_1228_pcontrolb_77.351000000434e2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_77.351000000434e2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	209338
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGTC	13857	6.6194384201626075	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCGT	7829	3.7398847796386705	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTGGAATCTCGTATGCCG	1620	0.773868098481881	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	363	0.17340377762279185	No Hit
GGTATAACACAGGAACGGAAACATAGTAGAACACTTATTCATCAGGGATTA	349	0.16671602862356572	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	342	0.16337215412395267	No Hit
GTATAATCCCTGATGAATAAGTGTTCTACTATGTTTCCGTTCCTGTGTTAT	257	0.12276796377150828	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCTTTC	25	3.876677E-5	45.006214	26
TCGGGAG	30	2.1549185E-6	45.00621	4
TTCGGGA	30	2.1549185E-6	45.00621	3
TGCCGTC	1445	0.0	44.0613	45
TCCGTTC	75	0.0	38.996067	36
CGTTCCT	70	0.0	38.567535	38
GTGGGGT	30	1.13581045E-4	37.505173	32
CATCCCC	30	1.13581045E-4	37.505173	5
AGTACGT	30	1.13581045E-4	37.505173	2
GCAGAGC	30	1.13740985E-4	37.49622	37
TCGGTTG	30	1.13740985E-4	37.49622	45
GCCGTCT	30	1.13740985E-4	37.49622	45
CCGTTCC	80	0.0	36.55881	37
CCATCCC	25	0.002101756	36.00497	4
TATAATT	25	0.002101756	36.00497	2
CGGGTTA	25	0.002104223	35.99637	15
TTTCGGG	25	0.002104223	35.99637	12
CAGCTTA	25	0.002104223	35.99637	9
GATCGAG	45	8.6616274E-7	34.99647	37
CTTCGGG	40	1.5530288E-5	33.75466	2