H23LNBCXX_l01n01_bir_1228_pcontrolb_66.35100000043386.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_66.35100000043386.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	76637
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTC	30626	39.962420240875815	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGT	16848	21.984159087646958	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCG	3295	4.2994898025757795	No Hit
AAAAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCAC	133	0.17354541539987214	No Hit
AAAGTACTCTGCGTTGATACCTGTCTCTTATACACATCTCCGAGCCCACGA	95	0.12396101099990867	No Hit
GTATCAACGCAGAGTACTTTTTCTGTCTCTTATACACATCTCCGAGCCCAC	84	0.1096076307788666	No Hit
AAAAAGTACTCTGCGTTGATACCCTGTCTCTTATACACATCTCCGAGCCCA	83	0.10830277803149915	No Hit
TTATACACATCTCCGAGCCCACGAGACGACGCTATATCTCGTATGCCGTCT	79	0.10308336704202932	Illumina PCR Primer Index 11 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCCGTC	3310	44.859493	45
ATGCCGT	5065	29.360296	44
TCTTATA	2855	27.974394	1
TATGCCG	5390	27.589962	43
ATCTCGT	5345	27.569698	37
TCTCGTA	5345	27.569698	38
TATCTCG	5345	27.569698	36
GTATGCC	5400	27.538872	42
CTCGTAT	5360	27.53452	39
CGTATGC	5385	27.532022	41
TCGTATG	5370	27.525139	40
GACGACG	5395	27.522692	26
ACGACGC	5395	27.522692	27
CTATATC	5375	27.517494	33
CGAGACG	5415	27.504133	23
GAGACGA	5415	27.504133	24
ACGAGAC	5425	27.494904	22
AGACGAC	5410	27.487967	25
CGACGCT	5390	27.482681	28
ATATCTC	5355	27.476202	35