H23LNBCXX_l01n01_bir_1228_pcontrolb_60.351000000432bd.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_60.351000000432bd.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	120579
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGTC	2318	1.9223911294669886	No Hit
ACAAACATAAGTCTCAGCCCTCAAAAATTTCCTGTTATGTCTTTGATTCTT	373	0.3093407641463273	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCGT	246	0.20401562461125072	No Hit
AGATTTGGGAGAAATGTAGAGAAAGAGTCGTTGAAAGAATTACAAAACCGG	200	0.16586636147256156	No Hit
TCCTACAATCATACCGGATGTACAGACAAATAATCATTCCACTATGACGTC	164	0.13601041640750047	No Hit
ATTGTTAAGAACGGAGGTCTACGCAAGGAAGAAGATTATCCTTACTCTATG	149	0.12357043929705835	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCAAGGCGAATCTCGTATGCCG	133	0.11030113037925345	No Hit
GAATTGAATGGAAAGGAACTCAATGGAATGGAATGGAATAGAGTGGAATGG	131	0.10864246676452781	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACTCC	30	2.1446722E-6	45.01411	4
GTCACCT	20	6.997333E-4	45.01411	3
TGATGCC	20	6.997333E-4	45.01411	4
GGGATCG	20	6.997333E-4	45.01411	4
GTACCGA	25	3.8628266E-5	45.014107	1
TACCACG	25	3.8628266E-5	45.014107	32
CGCTCAA	25	3.8628266E-5	45.014107	33
ACCACGG	25	3.8628266E-5	45.014107	33
CCACGGA	25	3.8628266E-5	45.014107	34
ACTGCGA	30	2.150813E-6	44.995438	13
CCCTCAT	20	7.01166E-4	44.995438	14
GGTGTAA	25	3.872311E-5	44.995438	6
CACGGAC	25	3.872311E-5	44.995438	35
CAGCCCT	20	7.01166E-4	44.995438	15
CTCCCAT	30	2.150813E-6	44.995438	26
TGAACGC	30	2.150813E-6	44.995438	8
CGACCAC	25	3.872311E-5	44.995438	23
CTCCACA	25	3.872311E-5	44.995438	7
CTAAGCT	20	7.01166E-4	44.995438	21
ACCTCGT	20	7.01166E-4	44.995438	6