H23LNBCXX_l01n01_bir_1228_pcontrolb_56.35100000043244.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H23LNBCXX_l01n01_bir_1228_pcontrolb_56.35100000043244.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	48552
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGTC	10146	20.897182402372714	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCG	3487	7.181990443236118	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCCGT	2847	5.863816114681167	No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGC	123	0.25333662876915475	No Hit
CATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTC	91	0.18742791234140715	No Hit
TCTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTCGTATGCC	56	0.11534025374855825	No Hit
GATGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGATAACCTATCTC	53	0.1091613115834569	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGAACAT	25	3.8356906E-5	45.0	21
GCCGTCT	20	6.9666625E-4	45.0	45
TGCCGTC	1210	0.0	44.07025	45
AACGCAG	25	0.002087335	36.0	6
TGTGCAG	25	0.002087335	36.0	22
ATGCCGT	1505	0.0	35.431892	44
ACGCAGA	30	0.0050994093	30.000002	7
CGCAGAG	30	0.0050994093	30.000002	8
CAACGCA	30	0.0050994093	30.000002	5
TATGCCG	1860	0.0	28.548388	43
GTATGCC	1865	0.0	28.47185	42
TCGTATG	1870	0.0	28.155083	40
CTCGTAT	1870	0.0	28.034761	39
CGTATGC	1880	0.0	28.00532	41
TCTCGTA	1875	0.0	27.84	38
TATCTCG	1870	0.0	27.794119	36
ATCTCGT	1875	0.0	27.720001	37
AACCTAT	1885	0.0	27.692307	32
TAACCTA	1895	0.0	27.664907	31
ACCTATC	1890	0.0	27.619045	33